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DRX230165: Illumina HiSeq 2000 sequencing of SAMD00239076
1 ILLUMINA (Illumina HiSeq 2000) run: 2.5M spots, 125.9M bases, 57.4Mb downloads

Submitted by: KYOTO_PREF
Study: Cucurbita moschata RAD-seq, genetic analysis of squash traits
show Abstracthide Abstract
The goal of this study was to obtain the genetic information of agronomic traits in squash (Cucurbita moschata). We made an F2 population derived from a cross between a Vietnamese cultivar Bi Ho Lo TN-6 and a Japanese cultivar Shishigatani to score traits for flowering times, textures of fruit surface, fresh weight and sizes of fruits, flesh colors, and Brix. A linkage map was constructed in the F2 population based on simple sequence repeat (SSR) markers and restriction site-associated DNA sequencing (RAD-seq) analysis. QTL analysis was conducted for the flowering and fruit traits. The RAD markers linked to the QTLs were converted to codominant cleaved amplified polymorphic sequence (CAPS) and derived cleaved amplified polymorphic sequence (dCAPS) markers.
Sample: Cucurbita moschata CuSF2-196
SAMD00239076 • DRS244893 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RAD-Seq
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol:
Spot descriptor:
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Runs: 1 run, 2.5M spots, 125.9M bases, 57.4Mb
Run# of Spots# of BasesSizePublished
DRR2402942,469,466125.9M57.4Mb2022-07-04

ID:
22691748

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